PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04427.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 476aa    MW: 53829.2 Da    PI: 6.6904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04427.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.5e-07214234526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              lC++f+  G C++G+ C+F+H+
  Sme2.5_04427.1_g00002.1 214 LCKYFLS-GMCNRGPHCSFSHS 234
                              9**7777.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.699209236IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5209235IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7210234IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4213234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5213236IPR000571Zinc finger, CCCH-type
SMARTSM003560.34237263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.451241264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6242270IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVSIFRKRCL LISICLLTVA TAIHYQLRQM ILVGSVKSSM VLILLRKALD PPEPEVVEDA  60
LSLLVHIHAV QKVPPRNRYK PTFYGRLLAS FSLSLDASML VVKFGAIGML REGIVLGIMM  120
DMQPQPILRP FGQESLYLDA DALDMNHELL ERGSEIRKCI SVPFFGDNEF LAYKVAQKLA  180
SVVKEMRSET SIDNSGNNDM LVYGNGGSTR EASLCKYFLS GMCNRGPHCS FSHSLQAMKP  240
TCKFFFTLQG CRNGDSCFYS HDAIPSAYSG VMPENDAADM SSLLQWFPVP YHGSILILDD  300
NDLYFSSHLA RFYTPSSIIS TTSLRDESTL DQIPTGVRIL WGHSHLYNTI LSKTAGRSVP  360
WNEVKCFLWF PKFEAEHKDR QQSMMRTFFE YFAIRMLGDD LYETKVEKLA RECCFFLNDS  420
FPFDEQNLGE LFDEVRVGKP MIQSKPVSYV FSLHPPVDVQ SGDFAPLLNQ NVNKIV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-140HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016555590.10.0PREDICTED: DExH-box ATP-dependent RNA helicase DExH8
TrEMBLA0A2G3C3Q40.0A0A2G3C3Q4_CAPCH; Zinc finger CCCH domain-containing protein 31
STRINGSolyc06g009070.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA755322