PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04427.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 179aa    MW: 20562.1 Da    PI: 6.1356
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04427.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB169.83.1e-5332127297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wal++lGf+dyvepl+ yl
  Sme2.5_04427.1_g00009.1  32 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHNEKRKTLNGDDICWALGSLGFDDYVEPLRRYL 117
                              79************************************************************************************ PP

                    NF-YB  88 kkyrelegek 97 
                              +k+relege+
  Sme2.5_04427.1_g00009.1 118 HKHRELEGER 127
                              *******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.2E-5226152IPR009072Histone-fold
SuperFamilySSF471136.06E-4134154IPR009072Histone-fold
PfamPF008082.8E-2737101IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.4E-186583No hitNo description
PROSITE patternPS0068506884IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.4E-1884102No hitNo description
PRINTSPR006153.4E-18103121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MVDNNINILV SKYDKERSNY NSISDQDGVI YKEQDRLLPI ANVGRIMKQI LPPNAKISKE  60
AKETMQECVS EFISFVTGEA SDKCHNEKRK TLNGDDICWA LGSLGFDDYV EPLRRYLHKH  120
RELEGERINQ SKGVGLGNSN IEDQRERDQE LTQRGSTIPF KITIMDHKGE SNFLPTRPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4332122292Transcription factor HapC (Eurofung)
4g92_B4e-4332122292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355798.11e-118PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLM1B6581e-116M1B658_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000379581e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.16e-59nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]