PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04657.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 214aa    MW: 25013.1 Da    PI: 5.1077
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04657.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.3e-2056108456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++++++eq++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Sme2.5_04657.1_g00007.1  56 KRKLSEEQVNLLEQSFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 108
                              45899***********************************************9 PP
2HD-ZIP_I/II119.91.4e-3855146293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+ls+eqv+lLE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L
  Sme2.5_04657.1_g00007.1  55 RKRKLSEEQVNLLEQSFGNEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVEKCRLETEVLKL 140
                              8************************************************************************************* PP

              HD-ZIP_I/II  88 reelke 93 
                              +e+l+e
  Sme2.5_04657.1_g00007.1 141 KEQLNE 146
                              ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.87650110IPR001356Homeobox domain
SMARTSM003895.4E-1953114IPR001356Homeobox domain
CDDcd000861.30E-1655111No hitNo description
SuperFamilySSF466893.17E-1856119IPR009057Homeodomain-like
PfamPF000463.4E-1756108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-2057117IPR009057Homeodomain-like
PRINTSPR000319.1E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000319.1E-690106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MNHQVIEDDM LLISQYYPDI YTQLVPEQGE SKPRRRRKKN KSGEGSGSSD QMIMRKRKLS  60
EEQVNLLEQS FGNEHKLESE RKDRLAAELG LDPRQVAVWF QNRRARWKSK KLEEEYSKLK  120
SEHDNNVVEK CRLETEVLKL KEQLNESEKE IQRLLLERCD GLSTNTSPSA SSFSMEAAME  180
PPFLGEFGME GMDNVFYAQE NNYVQGLDWV NLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13657RKKNKSGEGSGSSDQMIMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260011e-106AC226001.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0116F10, complete sequence.
GenBankHG9755141e-106HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232382.11e-130homeobox-leucine zipper protein ATHB-40
SwissprotO232082e-76ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A3Q7F7L41e-128A0A3Q7F7L4_SOLLC; Uncharacterized protein
STRINGSolyc02g085630.2.11e-129(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-58homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]