PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04667.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 79aa MW: 9308.9 Da PI: 11.9538

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04667.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.6	1.2e-26	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rq tfskRrng++KKA+ S+LCd++vav++fss+g+l+e+ss Sme2.5_04667.1_g00002.1 9 KRIEDKSSRQATFSKRRNGLMKKAKQFSILCDVDVAVLVFSSRGRLFEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.772	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.9E-35	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-27	2	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-27	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.5E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MGRKKVEIKR IEDKSSRQAT FSKRRNGLMK KAKQFSILCD VDVAVLVFSS RGRLFEFSST 60 NRFWKPDRDS RARLIRSKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	3e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269\|PubMed:16217607, ECO:0000269\|PubMed:9085264, ECO:0000269\|Ref.8}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	6e-75	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352169.1	5e-35	PREDICTED: agamous-like MADS-box protein AGL27
Refseq	XP_010321013.1	6e-35	agamous-like MADS-box protein AGL27
Refseq	XP_010321014.1	6e-35	agamous-like MADS-box protein AGL27
Swissprot	A2Y9P0	1e-25	MADS5_ORYSI; MADS-box transcription factor 5
Swissprot	Q0DEB8	1e-25	MADS5_ORYSJ; MADS-box transcription factor 5
TrEMBL	A0A0V0HPI5	1e-34	A0A0V0HPI5_SOLCH; Putative ovule protein
TrEMBL	A0A0V0HZX3	1e-33	A0A0V0HZX3_SOLCH; Putative agamous-like MADS-box protein AGL27-like
STRING	Solyc05g015730.1.1	3e-36	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10140.4	1e-27	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cui R, et al. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J., 2010. 61(5): p. 767-81 [PMID:20003164]