PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04703.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 324aa    MW: 36863.2 Da    PI: 9.5588
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04703.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61e-151050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              ien++ r +t+ kR++g  KKAeE+S+LC+ eva++ + +
  Sme2.5_04703.1_g00005.1 10 YIENNTGRRITYRKRKKGFVKKAEEISTLCGSEVAIVRYNE 50
                             59**********************************98866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.825153IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-18175IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-17160IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-11323IPR002100Transcription factor, MADS-box
CDDcd002669.73E-18385No hitNo description
PfamPF003197.5E-151153IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MPRRKVNLAY IENNTGRRIT YRKRKKGFVK KAEEISTLCG SEVAIVRYNE FNKTPIVFPD  60
YEKVVNTFTK FKALSTTIQS EKMMSTTKFT MKKIDKMANG LQKLRKKNSI KEKENMMHDM  120
LDRNDIPIDM NSKDLNDLMF VMKQNFKKIR ELKIKVDEEG STSNISQPIS RSLTLGRTIS  180
ERTKTPLLDS SDGPTSVIPS MSNGIEIEDP RSSLLVPNVA PIWKNSMVSK LKVHSSAPTE  240
MLQYIVMTSL ISTPTIPQMD SSMNIPTIGA PMPMNSYVNN LDGFSHSPAS FESKDWNDDD  300
INSLFDDSYC NNINVEDSNN NNNW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVNLAYIENNTGRRITYRKRK
22125RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.15e-20AGAMOUS-like 38