PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04723.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 123aa    MW: 14318.2 Da    PI: 8.7391
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04723.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-183184356
                             --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Sme2.5_04723.1_g00006.1 31 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 84
                             456899***********************************************9 PP
2HD-ZIP_I/II132.91.1e-4230121192
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++da+k+en++L++++++
  Sme2.5_04723.1_g00006.1  30 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFDAIKAENDALQAQNQK 115
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelk 92 
                              L++e+ 
  Sme2.5_04723.1_g00006.1 116 LHAEVC 121
                              **9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.12E-202288IPR009057Homeodomain-like
PROSITE profilePS5007117.3292686IPR001356Homeobox domain
SMARTSM003891.8E-172990IPR001356Homeobox domain
CDDcd000862.94E-143187No hitNo description
PfamPF000465.5E-163184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-203393IPR009057Homeodomain-like
PRINTSPR000313.3E-65766IPR000047Helix-turn-helix motif
PROSITE patternPS0002706184IPR017970Homeobox, conserved site
PRINTSPR000313.3E-66682IPR000047Helix-turn-helix motif
PfamPF021835.1E-1586120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MSFSGMEGNN ACEENHGEDD LSDDGSQAGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ  60
LARALGLQPR QIAIWFQNRR ARWKTKQLEK DYEVLKRQFD AIKAENDALQ AQNQKLHAEV  120
CKK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352881e-165AC135288.1 Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence.
GenBankAC1425051e-165AC142505.1 Solanum demissum chromosome 5 clone PGEC287I17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363243.16e-81PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC032e-61ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLM1CEL26e-80M1CEL2_SOLTU; Uncharacterized protein
TrEMBLQ6L4522e-80Q6L452_SOLDE; Homeobox-leucine zipper protein HAT7, putative
STRINGPGSC0003DMT4000658052e-80(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.18e-64HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]