PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04770.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 528aa    MW: 57929.4 Da    PI: 5.7727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04770.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-173683148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+ Ed +lvd+v  +G g+W+++ ++ g+ R++k+c++rw ++l
  Sme2.5_04770.1_g00001.1 36 KGPWTAAEDSILVDYVMTHGEGNWNAVQKHSGLARCGKSCRLRWANHL 83
                             79******************************************9986 PP
2Myb_DNA-binding50.26e-1689132146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +g++T+eE+ +++++++++G++ W++ a +++ gRt++++k++w++
  Sme2.5_04770.1_g00001.1  89 KGAFTPEEERRILELHAKMGNK-WARMAVELP-GRTDNEIKNYWNT 132
                              799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5313183IPR017930Myb domain
SuperFamilySSF466892.47E-2933130IPR009057Homeodomain-like
SMARTSM007171.7E-133585IPR001005SANT/Myb domain
PfamPF002495.9E-153683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-243790IPR009057Homeodomain-like
CDDcd001675.98E-113883No hitNo description
PROSITE profilePS5129425.15984138IPR017930Myb domain
SMARTSM007171.0E-1588136IPR001005SANT/Myb domain
PfamPF002491.2E-1489132IPR001005SANT/Myb domain
CDDcd001671.64E-1191132No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2591137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MSITSETNDR MTSKVDVDPP DEASGGDLGE SVPLKKGPWT AAEDSILVDY VMTHGEGNWN  60
AVQKHSGLAR CGKSCRLRWA NHLRPDLKKG AFTPEEERRI LELHAKMGNK WARMAVELPG  120
RTDNEIKNYW NTRIKRRQRA GLPIYPPDIS FLASQNKQNE ELGAFSSVDA QNPNVLGINN  180
FEIPPVEFKN LELYNHLLYP PSLGEIPARR LLHNPVSSFL SQGHRASYSS THFLPTVHPF  240
KRMRGSESVF SGSNGDLLTS LQYQNSGSLL AQPLGVSSYN HNLTYDDNRS FSSVVPGSHA  300
YLNGNSSSSD PTWAMKLELP SFQNQTTNWG SPSSALPSLE PVDILIQSPP AGHSESGSLS  360
PSNSGLLDAV LYEAQTMKVS NDNSHQGNEA PDDAVNNSSP DIKEWETYVN PMPISPLSHF  420
AAPAFNDYAP ISGSSLHEFP SMATMPGCKI KQEIGDLPPL DEKDDTSNQM IFTSPKTQHA  480
KNHPALKDAL DFGFFDDFAW DCKQIHAVAT SSGQACGHNS CPWDATAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30341375107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158629.10.0PREDICTED: transcription factor GAMYB-like isoform X1
RefseqXP_015158630.10.0PREDICTED: transcription factor GAMYB-like isoform X2
TrEMBLM1C2L60.0M1C2L6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000584260.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.18e-77myb domain protein 33