PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04792.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 188aa    MW: 21107.3 Da    PI: 5.2967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04792.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-053153123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ykC+ C++ Fs+   L  H++ H
  Sme2.5_04792.1_g00004.1 31 YKCSFCKRDFSNAQALGGHMNIH 53
                             9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-52957IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.25E-72957No hitNo description
SMARTSM003550.00743153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4893158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MENDIPNSSN SKKYQITWGS NGGMISQVKS YKCSFCKRDF SNAQALGGHM NIHRKDRAKL  60
REISIETSDI QKHVSPSLPD HVQAPSNIDE SILQQDISSD DMSSPSKRPC VTLEEQQQHQ  120
HHHSISKGKD ENHEGDLLQL PLFVDSPSKE EINCVETQEG NNKDMELSVD DSKLDLELRL  180
GPESSIKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-117HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016541384.11e-90PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A1U8EBZ53e-89A0A1U8EBZ5_CAPAN; transcriptional regulator TAC1-like
STRINGPGSC0003DMT4000227402e-89(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-17C2H2 family protein