PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04806.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 177aa MW: 20517 Da PI: 8.0216

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04806.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.8e-19	16	69	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++++q++ Le F +n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k Sme2.5_04806.1_g00005.1 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAHELGLPPRQVAIWYQNKRARWK 69 67789************************************************9 PP
2	HD-ZIP_I/II	111.8	4.4e-36	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+ e+ne+L+ eve+L Sme2.5_04806.1_g00005.1 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAHELGLPPRQVAIWYQNKRARWKSQSLEVDYKSLQQRLDSALEDNEKLKLEVERL 101 69********************************************************************************** PP HD-ZIP_I/II 88 reelke 93 r+el++ Sme2.5_04806.1_g00005.1 102 RKELNK 107 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.42E-17	8	72	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.661	11	71	IPR001356	Homeobox domain
SMART	SM00389	2.2E-16	14	75	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-16	16	69	IPR001356	Homeobox domain
CDD	cd00086	2.21E-14	16	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-19	18	78	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	42	51	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	51	67	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDFLNSQTRK NHLKCHKKRL NQDQVRLLEI SFSSNNKLDS DRKSQLAHEL GLPPRQVAIW 60 YQNKRARWKS QSLEVDYKSL QQRLDSALED NEKLKLEVER LRKELNKTQE MLLGFNTTTN 120 YSSISSSCDE VGSTLCLQLH DQSKHNHLDK ELYACLIGDE GHFGTHDGHN FFASSLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	18	RKNHLKCHKKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364310.1	1e-117	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A2G2XF04	1e-116	A0A2G2XF04_CAPBA; Uncharacterized protein
TrEMBL	A0A2G3D5C9	1e-116	A0A2G3D5C9_CAPCH; Uncharacterized protein
STRING	PGSC0003DMT400081296	1e-116	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	7e-25	homeobox protein 52