PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04832.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26834.5 Da    PI: 6.796
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04832.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-181050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +ien++ r v++ kR++g+lKKA ELS+LCd++ a +i+s+
  Sme2.5_04832.1_g00006.1 10 FIENSTERRVSYRKRQKGLLKKARELSTLCDVQMAGVIYSP 50
                             8*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.021149IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-21295IPR002100Transcription factor, MADS-box
CDDcd001201.25E-21259No hitNo description
PRINTSPR004042.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161052IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MTRKRVKLAF IENSTERRVS YRKRQKGLLK KARELSTLCD VQMAGVIYSP YHSEPTVFPN  60
HDVAINTFTT FKELPSLEQS KSMATQEKFT KERMQKMEEQ LWRVRKENRI REFTNKMYEM  120
LNGEGIPAAT SIYGLNDLSY VINQNLKQIC EAIEKKVHEE GSTSNASLST PVSTQMNPSM  180
NIPQMDLFVP MNNYQNYSDS FPQSPALFEM FDWNDDIMTL LEDPSFNNIN V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RKRVKLAFIENSTERRVSYRKRQK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159212.11e-111PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1DI711e-110M1DI71_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000894541e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.12e-31AGAMOUS-like 38