PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04901.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

FAR1

Protein Properties

Length: 954aa MW: 109295 Da PI: 6.7723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04901.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.4	5.1e-28	67	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g++ e+++ ++r+ ++++t+Cka+++vk+++dgkw+++++ +eHnH Sme2.5_04901.1_g00002.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGTTPESDTG---SSRRPSVKKTDCKASMHVKRKRDGKWYIHEFIKEHNH 149 9*************************************999877...77888899*************************** PP FAR1 88 elap 91 el p Sme2.5_04901.1_g00002.1 150 ELLP 153 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-25	67	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-25	273	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.311	549	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-6	561	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.2E-9	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010018	Biological Process	far-red light signaling pathway
GO:0042753	Biological Process	positive regulation of circadian rhythm
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 954 aa Download sequence Send to blast
MVDHGDVVQS SVQLTGDMVD AIDKSCHSRD SGVSHSPRRS VTGVEENTDF EPYDGIEFES 60 HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGTTPESD TGSSRRPSVK 120 KTDCKASMHV KRKRDGKWYI HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ FDKGRCLSLE EGDAQVMLEY FMHIQKENPY 240 FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY MKSNEKMPFA LLIGVNHHCQ 300 PMLLGCALIA DETKPTFVWL MKTWLRAVGG QAPKVIITDQ DKSLQAALEE VFPCSSHCFA 360 LWHVLERIPE ILAHVVKQHE NFMEKFNKCI FKSVTDEQFD LRWWKMVSRF ELQENEWIRT 420 LYEDRKKLKR TPQRSESISS FFDKYIHKKI SLKEFMRQYG MILQNRYEEE AVADFDTLHK 480 QPALKSPSPW EKQMSTIYTH AIFKKFQVEV LGVVGCHPKK EAENGENVTF RVDDCEKDEN 540 FMVTWNEARS VMVTWNEARS DVSCSCLLFE YKGFLCRHAM IVLQMCGLSS IPSQYILKRW 600 TKDARNIQLM FEGAERIQTR VQRYNDLCRR AIELGEEGSL SEESYGIAFR ALDEALKNCV 660 NVNNRSSALA ECSSGAVGLR DLEEDTQGIH ATKTIRKKNT NKKRKVHSEP EAAIVEAQDS 720 LQQMGNLTAG GMTLNGYYGT HQNVQGLIQL NLMEPPHDGY YVNQQNMQGL GQLNTIAPGH 780 DGFFGSQQSI PGLGHLDFRQ PSFTYGLQNL LVGEDDEAVD EGSDSLGFFG QSSKQEPSKR 840 NKRVKKNSNA KLGLLSFLAI TRRRLLTTNE IVQAIYSEEG HLLKLIEEEQ PVAPQSGANG 900 QSVEEQINFT TPTNEQSEEQ AEGHSTQKKR GRTEMHNEKY IIPEAVKDST LVTI

Sequence ? help Back to Top

Protein Sequence Length: 954 aa Download sequence Send to blast

MVDHGDVVQS SVQLTGDMVD AIDKSCHSRD SGVSHSPRRS VTGVEENTDF EPYDGIEFES  60
HEAAYAFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGTTPESD TGSSRRPSVK  120
KTDCKASMHV KRKRDGKWYI HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKMYVEM SRQCGGSQEV GLLTNDLNYQ FDKGRCLSLE EGDAQVMLEY FMHIQKENPY  240
FFYAIDLNED QRLRNLFWID AKSRKDYVSF SDVVFFDTSY MKSNEKMPFA LLIGVNHHCQ  300
PMLLGCALIA DETKPTFVWL MKTWLRAVGG QAPKVIITDQ DKSLQAALEE VFPCSSHCFA  360
LWHVLERIPE ILAHVVKQHE NFMEKFNKCI FKSVTDEQFD LRWWKMVSRF ELQENEWIRT  420
LYEDRKKLKR TPQRSESISS FFDKYIHKKI SLKEFMRQYG MILQNRYEEE AVADFDTLHK  480
QPALKSPSPW EKQMSTIYTH AIFKKFQVEV LGVVGCHPKK EAENGENVTF RVDDCEKDEN  540
FMVTWNEARS VMVTWNEARS DVSCSCLLFE YKGFLCRHAM IVLQMCGLSS IPSQYILKRW  600
TKDARNIQLM FEGAERIQTR VQRYNDLCRR AIELGEEGSL SEESYGIAFR ALDEALKNCV  660
NVNNRSSALA ECSSGAVGLR DLEEDTQGIH ATKTIRKKNT NKKRKVHSEP EAAIVEAQDS  720
LQQMGNLTAG GMTLNGYYGT HQNVQGLIQL NLMEPPHDGY YVNQQNMQGL GQLNTIAPGH  780
DGFFGSQQSI PGLGHLDFRQ PSFTYGLQNL LVGEDDEAVD EGSDSLGFFG QSSKQEPSKR  840
NKRVKKNSNA KLGLLSFLAI TRRRLLTTNE IVQAIYSEEG HLLKLIEEEQ PVAPQSGANG  900
QSVEEQINFT TPTNEQSEEQ AEGHSTQKKR GRTEMHNEKY IIPEAVKDST LVTI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00434	DAP	Transfer from AT4G15090	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006364927.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_006364928.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_006364929.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_006364930.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_015159680.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_015159681.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2G2X5B3	0.0	A0A2G2X5B3_CAPBA; Protein FAR-RED IMPAIRED RESPONSE 1
STRING	Solyc08g060840.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]