PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_04907.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 338aa    MW: 36411.1 Da    PI: 6.9891
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_04907.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08171196227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              k e Cr +  +G C++G++C+F Hg+
  Sme2.5_04907.1_g00001.1 171 KSETCRWWEDFGSCRFGSKCRFVHGE 196
                              6789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-11167201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7168200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.145169197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011169196IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-6171196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEFFYGSSND NQASVVHSFD GNVSPINAQN FIGQGRFYSG SKTPILDPYA SSESTGSSSN  60
IVSPLARYIC PGSPVPFTTD SPKHRSLVNT SSGSRSSSGG RVSRSPLGSL ENIEIPLVFR  120
TPVKVEEDVV VMDGILVEPK HGPRAKLSPS TSASGGRLLS STSGNDNSFH KSETCRWWED  180
FGSCRFGSKC RFVHGEEGLR PTAFTNRNQS EALVSISYSS GSSSYGPRGR SALHQVHSAA  240
PPTEATEMST PTNTTTSTLK AFTKDREPSS KDSSTTSTST STLSGTHWCP LDDNIEVNLP  300
SSGEKCASWK DVDTHICTIL YGPSQRKRLP VFVDFIEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754490.0HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089576.11e-156mRNA decay activator protein ZFP36L2-like
RefseqXP_015089577.11e-156mRNA decay activator protein ZFP36L2-like
RefseqXP_027767893.11e-156mRNA decay activator protein ZFP36L2-like
RefseqXP_027767894.11e-156mRNA decay activator protein ZFP36L2-like
RefseqXP_027767895.11e-156mRNA decay activator protein ZFP36L2-like
RefseqXP_027767896.11e-156mRNA decay activator protein ZFP36L2-like
RefseqXP_027767897.11e-156mRNA decay activator protein ZFP36L2-like
TrEMBLA0A0V0IC541e-148A0A0V0IC54_SOLCH; Putative zinc finger protein 36, C3H1 type-like 1-like
STRINGSolyc10g047040.1.11e-148(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77651824