PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_04963.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

G2-like

Protein Properties

Length: 265aa MW: 29936.4 Da PI: 6.6788

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_04963.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	59.7	6.3e-19	216	265	1	51
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 k r+ Wt +LH++F+++ve+L G+ k Pk+ile+m+v+++t+ +v+SHLQ Sme2.5_04963.1_g00004.1 216 KSRILWTDDLHAKFMKVVEHL-GEGKCFPKQILEIMEVPDITRLQVASHLQ 265 689****************.9*************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.55E-14	214	265	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.1E-18	215	265	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.2E-18	216	265	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MTTPYQATTQ DAGVVLIHHG SEFVAKMVDL LKCYEHKVMA VGMTSTFMTM LSNENEKIDA 60 IMISRHSLDF SSLRLLGQAV TSKIISLAIC DEHNEQHSVL KSLNIGTYIV VEKPLDEKIV 120 DDLSQFVLRK KIKKEKAVEG LEENGVEKNV DDNGNNNIIG NTEEQDGKKN NVPKIEEQSN 180 NIHEVENVVV SNEKCKQRTK RGMKNMKVVN ENIGKKSRIL WTDDLHAKFM KVVEHLGEGK 240 CFPKQILEIM EVPDITRLQV ASHLQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA813	23	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27070.1	2e-14	response regulator 13