PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05020.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YB
Protein Properties Length: 133aa    MW: 14800.5 Da    PI: 5.9587
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05020.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB161.41.4e-5022117297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              reqdr+lPia v+rimk++lP nakisk+aket+qecvsefi+fvtseasdkc++e+rkt+ngdd++wal+tlGf+dy  ++k yl
  Sme2.5_05020.1_g00009.1  22 REQDRLLPIAIVGRIMKNILPPNAKISKEAKETMQECVSEFIGFVTSEASDKCRKERRKTLNGDDICWALGTLGFDDYSTAFKRYL 107
                              89************************************************************************************ PP

                    NF-YB  88 kkyrelegek 97 
                              ++yre egek
  Sme2.5_05020.1_g00009.1 108 HRYRESEGEK 117
                              *******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-4817123IPR009072Histone-fold
SuperFamilySSF471135.8E-3724120IPR009072Histone-fold
PfamPF008081.3E-252791IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-155573No hitNo description
PRINTSPR006152.2E-157492No hitNo description
PRINTSPR006152.2E-1593111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MSQNMGLGGA SSSNDEGAGS CREQDRLLPI AIVGRIMKNI LPPNAKISKE AKETMQECVS  60
EFIGFVTSEA SDKCRKERRK TLNGDDICWA LGTLGFDDYS TAFKRYLHRY RESEGEKVNQ  120
EQAGGSQPRN YLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4122112292Transcription factor HapC (Eurofung)
4g92_B7e-4122112292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755131e-113HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342784.19e-83PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822481e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLM1C2L22e-81M1C2L2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000584143e-82(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-59nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]