PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05062.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 158aa MW: 18490.9 Da PI: 4.8484

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05062.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	34.2	3.3e-11	6	36	13	43
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsst 43 f k +n+++K A+ LSvLCd+e ++++f ++ Sme2.5_05062.1_g00009.1 6 FNKKLNTLFKQANDLSVLCDVETSLVVFNPE 36 899************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.381	1	34	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-12	2	74	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-10	5	41	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MKKFIFNKKL NTLFKQANDL SVLCDVETSL VVFNPEENNV YACPSLAQAN DIVKNYLTNI 60 KNQNPGKMVR HDDYLEKIAD AQESRVYERE QMAEVKEMEN LFKQLVYARK EFDELDVRET 120 KSLLKLFAGK RTKLEERLKQ LNENVEDEIN GDENDGQH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566679.1	2e-48	PREDICTED: agamous-like MADS-box protein AGL66
TrEMBL	M1A3R3	3e-54	M1A3R3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400014105	5e-55	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	4e-13	AGAMOUS-like 96