PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05072.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

BBR-BPC

Protein Properties

Length: 219aa MW: 23983.4 Da PI: 10.4014

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05072.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	192.8	4e-59	55	219	133	301
GAGA_bind 133 ealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGa 218 +++ ++++ +k+kk + k+ r+++ k k +++++++++skk ++++++ + k+ v s D s+lP+P CsCtG+ Sme2.5_05072.1_g00004.1 55 VKFK-AKSQKIKKNKKPPMKGTRETVSKLLKVERPENEPSSSKKPKREARCG--EATVTKNPTSVYGRASADFSGLPPPFCSCTGV 137 2222.34455566666677788888888889999988777776666666654..6677778888899***************** PP GAGA_bind 219 lrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +r+CYk G GGWqS+CCtt++S yPLP ++ ++g R grKm +ga++klL La+ GydlsnpvDLkdhWAkHG nkf+t++ Sme2.5_05072.1_g00004.1 138 SRRCYKCG-GGWQSSCCTTSLSEYPLPLNPSKPGNRKPGRKMTNGAYNKLLCTLATGGYDLSNPVDLKDHWAKHGSNKFITLK 219 **99.9*********************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.3E-32	1	219	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.6E-52	56	219	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MASQVNHKEE TFDSHFPPIH QDNFPPATKF GSRSKPCAAV PIRSVAPTGE QNVDVKFKAK 60 SQKIKKNKKP PMKGTRETVS KLLKVERPEN EPSSSKKPKR EARCGEATVT KNPTSVYGRA 120 SADFSGLPPP FCSCTGVSRR CYKCGGGWQS SCCTTSLSEY PLPLNPSKPG NRKPGRKMTN 180 GAYNKLLCTL ATGGYDLSNP VDLKDHWAKH GSNKFITLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009521	0.0	AP009521.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLe0068N03, complete sequence.
GenBank	AP010257	0.0	AP010257.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0172P19, complete sequence.
GenBank	AP010798	0.0	AP010798.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0011I05, complete sequence.
GenBank	FJ982306	0.0	FJ982306.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
GenBank	FJ982307	0.0	FJ982307.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC3) gene, complete cds.
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001266119.1	1e-134	GAGA-binding transcriptional activator
TrEMBL	H1ZN90	1e-132	H1ZN90_SOLLC; GAGA-binding transcriptional activator
STRING	Solyc08g076230.1.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13714	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35550.4	2e-47	basic pentacysteine 7