PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05091.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 290aa    MW: 32710.8 Da    PI: 6.7081
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05091.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.72.1e-4371061100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrrkC+++Cv+apyfp +qpkkf+nvhk+FGasnv+kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++
  Sme2.5_05091.1_g00003.1   7 PCAACKFLRRKCTQECVFAPYFPPDQPKKFENVHKVFGASNVTKLLNELNASQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHR 92 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              l+q++++l  +k+e
  Sme2.5_05091.1_g00003.1  93 LKQVQEDLLNAKKE 106
                              *******9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.1916107IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-437103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPKKFENVH KVFGASNVTK LLNELNASQR  60
EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HRLKQVQEDL LNAKKELATY IGPQAMLPIL  120
QPSGYIQPHP NNPSSSTMMP YNMQPMGLPT GMQQLMIRDP QQQNQQQVIE AHQLAAVMAA  180
REQQEMMRTY EQQQHQFNSG FDSAGPVTAT GFHQMSSSVS PSLALASFES DPYQIQQTQQ  240
EQHRGQVQIQ VQPHQLLQQQ QQQQLPQQPQ TPQQQQSAKS EEERSIGPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4931107114LOB family transfactor Ramosa2.1
5ly0_B4e-4931107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233943.11e-149LOB domain-containing protein 36-like
SwissprotQ9FKZ36e-85LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A0V0HY401e-148A0A0V0HY40_SOLCH; Putative LOB domain-containing protein 36-like
STRINGSolyc02g065150.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-85ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]