PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05099.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 176aa    MW: 20314.5 Da    PI: 10.0859
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05099.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-09135164130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                              +g+WT+eEd+ll ++ +++G g W++++++
  Sme2.5_05099.1_g00001.1 135 KGSWTEEEDLLLRKCMEKYGEGKWHLVPAR 164
                              799***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-11128164IPR009057Homeodomain-like
SuperFamilySSF466894.67E-8129164IPR009057Homeodomain-like
PROSITE profilePS5129412.845130176IPR017930Myb domain
PfamPF002491.7E-7135165IPR001005SANT/Myb domain
CDDcd001672.14E-5137173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGLHQGSVLN PFLCVQRSDE IRNDTIWKKL EVAPVADKMR EARLRWFRHV QRKSTDATAR  60
RCERLVLGAT RRGRGRPKEY WGGDFEMRVP RKSSLYFYEV VVTSAYILPS LDPICGIPLR  120
VNNPPIICTS VRVRKGSWTE EEDLLLRKCM EKYGEGKWHL VPARAVVNSD VQVDTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7274761e-68KF727476.1 Solanum melongena cultivar Zi Chang anthocyanin R2R3-MYB transcription factor (MYB1) mRNA, complete cds.
GenBankKT2590431e-68KT259043.1 Solanum melongena Myb1 mRNA, complete cds.
GenBankKT7279651e-68KT727965.1 Solanum melongena Myb transcription factor 1 (Myb1) gene, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66380.11e-12myb domain protein 114