PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05099.1_g00002.1
Common NameMyb1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 256aa    MW: 29633.5 Da    PI: 6.8966
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05099.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-171562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd+ll ++ +++G g W++++++ g++R++k+c++rw++yl
  Sme2.5_05099.1_g00002.1 15 KGSWTEEEDLLLRKCMEKYGEGKWHLVPARAGLNRCRKSCRLRWLNYL 62
                             799*******************************************97 PP
2Myb_DNA-binding43.86e-1468112147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg +  +E +l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Sme2.5_05099.1_g00002.1  68 RGDFASDEVDLILRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTN 112
                              6778889***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-23864IPR009057Homeodomain-like
PROSITE profilePS5129424.9451066IPR017930Myb domain
SuperFamilySSF466893.27E-2812109IPR009057Homeodomain-like
SMARTSM007173.7E-151464IPR001005SANT/Myb domain
PfamPF002491.5E-161562IPR001005SANT/Myb domain
CDDcd001671.32E-101762No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2065116IPR009057Homeodomain-like
PROSITE profilePS5129416.82567117IPR017930Myb domain
SMARTSM007171.1E-1267115IPR001005SANT/Myb domain
PfamPF002491.9E-1268113IPR001005SANT/Myb domain
CDDcd001677.78E-974113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNNPPIICTS VRVRKGSWTE EEDLLLRKCM EKYGEGKWHL VPARAGLNRC RKSCRLRWLN  60
YLRPHIKRGD FASDEVDLIL RLHKLLGNRW SLIAGRLPGR TANDVKNYWN TNLLRKFTIA  120
PQKINNTCKD IISTNEIIRP QPRKYLSSIK KNNLTNNNVI VDKEERCKEI TSDKQTTDAS  180
MDNGDQWWKS LLENFNDDAV EGEEEAVTNY EKTLTSLLHE EISSPPLNGG GNSMQQEQCD  240
NWDDFSADID LWNLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-24151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7274760.0KF727476.1 Solanum melongena cultivar Zi Chang anthocyanin R2R3-MYB transcription factor (MYB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089442.11e-128transcription factor MYB113-like
SwissprotQ9FNV92e-62MY113_ARATH; Transcription factor MYB113
TrEMBLA0A140D2R60.0A0A140D2R6_SOLME; Myb transcription factor 1
STRINGSolyc10g086260.1.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-65myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Docimo T, et al.
    Phenylpropanoids Accumulation in Eggplant Fruit: Characterization of Biosynthetic Genes and Regulation by a MYB Transcription Factor.
    Front Plant Sci, 2015. 6: p. 1233
    [PMID:26858726]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]