PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05108.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 384aa    MW: 42175.3 Da    PI: 8.416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05108.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.9e-12306346445
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              W ++E+ ll+++++++G+g+W+ + +++g ++t + c++++ 
  Sme2.5_05108.1_g00003.1 306 WNADEEMLLLEGIEMYGMGNWAEVGEHVG-TKTKEACVDHFK 346
                              *****************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045351.4E-4126173IPR006702Domain of unknown function DUF588
TIGRFAMsTIGR015693.0E-4133186IPR006459Casparian strip membrane protein
PROSITE profilePS5013511.296242289IPR000433Zinc finger, ZZ-type
SMARTSM002915.9E-11242287IPR000433Zinc finger, ZZ-type
PfamPF005691.2E-10245287IPR000433Zinc finger, ZZ-type
CDDcd023355.82E-24246294No hitNo description
SuperFamilySSF578505.06E-14246309No hitNo description
PROSITE patternPS013570248275IPR000433Zinc finger, ZZ-type
SuperFamilySSF466896.28E-11298352IPR009057Homeodomain-like
PROSITE profilePS5129320301353IPR017884SANT domain
SMARTSM007178.4E-10302351IPR001005SANT/Myb domain
PfamPF002494.5E-11305346IPR001005SANT/Myb domain
CDDcd001671.24E-11306346No hitNo description
Gene3DG3DSA:1.10.10.601.0E-6306347IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSYLGIGVSP GDVPVHHGNN LKVIEKRVRI TELILRCLNL GLAVVGAVLI GTDSQVKVIF  60
SVKKEAKFTD MKVLVFLVIA NGVAAAYSLI QVLRCIFSMI RGSVLFNKPL AWAIFSGDQL  120
MAYLILAAVA AAVQSGVISK FGQPELQWMK VCNLYGRFCN QVGEGIASSV IVSLGMIALS  180
GISAFSLFRF KKLFPQIEPI ASSSHGKTTT LLVMPRSRRK KNASSGDNLE SVTTGPGTAD  240
GKRALYHCNY CNKDISGRTR IKCAVCSDFD LCIECFSVGA EVHPHKSHHQ YRVMDILDFP  300
LICPDWNADE EMLLLEGIEM YGMGNWAEVG EHVGTKTKEA CVDHFKDAYL ESPYFPLPDM  360
THVMGKNRKE LLAMAKENFA DKKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C5e-422463615120Transcriptional adapter 2
6cw3_E5e-422463615120Transcriptional adapter 2
6cw3_G5e-422463615120Transcriptional adapter 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0129500.0BT012950.1 Lycopersicon esculentum clone 114119F, mRNA sequence.