PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05212.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 66aa MW: 7406.48 Da PI: 8.2213

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05212.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1.1e-08	14	43	1	29
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIar 29 rg+W++eEde+l+d ++++G+ +W + ++ Sme2.5_05212.1_g00003.1 14 RGPWSPEEDEKLKDFINKFGTAgNWIALPQ 43 89******************9889977666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-11	5	45	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.35E-7	9	49	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.399	9	49	IPR017877	Myb-like domain
Pfam	PF00249	5.3E-7	14	46	IPR001005	SANT/Myb domain
CDD	cd00167	5.42E-5	16	40	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MGRAPCCDKA NVKRGPWSPE EDEKLKDFIN KFGTAGNWIA LPQKAEIRRG GGDILDFISL 60 DVRNLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269\|PubMed:16461581}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF496586	3e-36	JF496586.1 Capsicum annuum BLIND (BLIND) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340126.1	1e-27	PREDICTED: transcription factor RAX2-like
Swissprot	Q9SJL7	1e-25	RAX2_ARATH; Transcription factor RAX2
TrEMBL	M1AEE3	9e-26	M1AEE3_SOLTU; Uncharacterized protein
STRING	Solyc11g069030.1.1	3e-26	(Solanum lycopersicum)
STRING	PGSC0003DMT400020979	2e-26	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	6e-28	MYB family protein

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700]