PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05296.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 1484aa    MW: 168338 Da    PI: 6.1099
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05296.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-18121175256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++k+q+ +Lee F+++++++ ++++ LAk+lgL  rqV vWFqNrRa+ k
  Sme2.5_05296.1_g00004.1 121 RKKLRLSKDQTVVLEESFKEHNTLNPKQKQALAKRLGLRPRQVEVWFQNRRARTK 175
                              788899***********************************************98 PP
2HD-ZIP_I/II121.44.6e-39121210191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rlsk+q  +LEesF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL+kev+e
  Sme2.5_05296.1_g00004.1 121 RKKLRLSKDQTVVLEESFKEHNTLNPKQKQALAKRLGLRPRQVEVWFQNRRARTKLKQTEVDFELLKRCCENLTEENKRLQKEVQE 206
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              L+ +l
  Sme2.5_05296.1_g00004.1 207 LK-AL 210
                              *9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.9E-16189IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466891.07E-17112178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-17112171IPR009057Homeodomain-like
PROSITE profilePS5007117.637117177IPR001356Homeobox domain
SMARTSM003899.1E-17119181IPR001356Homeobox domain
PfamPF000467.3E-16121175IPR001356Homeobox domain
CDDcd000861.71E-15121178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
SMARTSM003408.7E-25177220IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-9177211IPR003106Leucine zipper, homeobox-associated
SuperFamilySSF525403.92E-7245333IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009319.9E-8266333IPR002182NB-ARC
SuperFamilySSF525407.4E-48649895IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3006.6E-11649764IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.3E-55650946IPR002182NB-ARC
PRINTSPR003643.3E-19665680No hitNo description
PRINTSPR003643.3E-19745759No hitNo description
PRINTSPR003643.3E-19837851No hitNo description
SuperFamilySSF520582.76E-299781297IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.2E-2310181213IPR032675Leucine-rich repeat domain, L domain-like
PfamPF138552.0E-610421098IPR001611Leucine-rich repeat
PRINTSPR003643.3E-1910851101No hitNo description
SuperFamilySSF520581.68E-712601453IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.1E-612681441IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1484 aa     Download sequence    Send to blast
MLENQDLKLS LSLNFPENKT TNNPLLLNSW IGSFPSSDKN LEKCKTFFKG IDVNIAPTIT  60
EEEEEGEEIG VSSPNSSISS LSGNKRNERG EIINCSEELE MEIERECSRS ISDEEDGETS  120
RKKLRLSKDQ TVVLEESFKE HNTLNPKQKQ ALAKRLGLRP RQVEVWFQNR RARTKLKQTE  180
VDFELLKRCC ENLTEENKRL QKEVQELKAL KLSPQFYMQM TPPTTLTMCP SCERVASPPA  240
LSVLGPVCII SVGGVGKTTL MKNLYSVPRP ENPARSKVTI TSRSLGVCKK MRTDTEMMAY  300
TLDKDECWQL FVKSAGAVAK LEHIQPLAKE IVRVWWFTFV KGFLGEHDTY EEAHSRRITT  360
VQSLKDACLL ETLSLKMHDV AREIALRMAD PSVFLAGGGL TDRLYASALA SVKRVSLAIG  420
RHFNYLFSSA GRVASPMRPK NVGGATEYVG TSGGNEVIDC DRIEHRKLPL SIQTTNVKAT  480
KGFSEWWSLL AVSGGFVVEV GKFVSKCIYP KIENVVHFSS KIETLREEME KLTKLRDDIK  540
GKVEGAEAEG YKAKPDVIKW IEDVHELENE WETMQESIAK AKKLAYKCCP KRSLRSEVCT  600
QMQNIRDQVC RLKEVGESFG SNLMVENYQV KKVEYLPVTS VKDQQAATRN LNQILQYLED  660
DKVCIIGVWG AGGIGKTTLV KNLNNELRQI GVSRPKLSFG VVVWITMPKP TDVSKVQALI  720
AKRLSLVEDN EGNEESNASE IYQRLKQEKS FLLILDDVWE AINLDHVGVP QPKDHPGSKI  780
IITSRFWPVC KQMKTHTEMN IFTLDEDESW QLFIKNAGDV AKREDIQPLA MDIARECDGL  840
PLAITVIGAS MSGKKRVEQW VDALDSLRMS EPYDTYVRDK VYKIIKLSFD NLDPDVELSP  900
EQRSTINKRR GDIQSCFLYC SLYPEDIPTD ELICCWWAEG FIGEHDTVEK AYNRGITVIE  960
TLKGACLLEE GNLMDSVKMH DVVRDVARWI ANSSKDEHNS LIQAAVGLTE LSHTKVSSSV  1020
KRISFMSNNI ECLPDCFEEC PETTSLLLQE NPLAKISDEL FLAFPALRVL NLSETGIRAL  1080
PSSINSLCQL RVLILQNCYE LIELPPIGDL RNLLVLDCGN TMLHCVPQGM DKLTNLRLLN  1140
MPATNLRSSI KEGFFLKLSS IEMINMMDSY LGSTSFDEIS SLYNLTSLFI SLNNSAIFHR  1200
DHTWMKRLKR FQIDIVYNPM IRFQIGIGDN PMMIPFQSSN KSRRAMTVYG CAIFSNGELS  1260
GMLQFASDLY LEECKGIRKL IAHNSFDGLK SLHIFSCSCD FRHNHAEEGS GQFDPLPNLE  1320
HLSLDELNNL ESVSDFGQLL GLRFSKLRLL NIQYCDSLTC LFNVEGTFSV PEHLEELEID  1380
DCSNLVELFA QCSSSQTTVV NSKIRKLRLN KLPKLETFGE PQSIWEHLEE LKVKRCYRLR  1440
MLPLSIQTSN NIKLIEGEAL WWNQLQWDKD NYKRNLEQYF TIYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C4e-266391193158719Disease resistance RPP13-like protein 4
6j5t_F4e-266391193158719Disease resistance RPP13-like protein 4
6j5t_G4e-266391193158719Disease resistance RPP13-like protein 4
6j5t_L4e-266391193158719Disease resistance RPP13-like protein 4
6j5t_O4e-266391193158719Disease resistance RPP13-like protein 4
6j5u_A4e-266391193158719Disease resistance RPP13-like protein 4
6j5v_A4e-266391193158719Disease resistance RPP13-like protein 4
6j5w_A4e-266391193158719Disease resistance RPP13-like protein 4
6j6i_C4e-266391193158719Disease resistance RPP13-like protein 4
6j6i_F4e-266391193158719Disease resistance RPP13-like protein 4
6j6i_G4e-266391193158719Disease resistance RPP13-like protein 4
6j6i_L4e-266391193158719Disease resistance RPP13-like protein 4
6j6i_O4e-266391193158719Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125SRKKLRL
2169177RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358397.10.0PREDICTED: disease resistance protein At4g27190-like
TrEMBLM1AXG00.0M1AXG0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000324420.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-77homeobox protein 2