PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05369.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 628aa    MW: 71647.8 Da    PI: 8.5577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05369.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-10345386346
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              ++T +E+el++++++  G++ W+ Ia+ +  gRt++++k  w++
  Sme2.5_05369.1_g00001.1 345 SFTHQEEELILKLHATIGSR-WSIIAQQLT-GRTDNDVKALWNT 386
                              79******************.********9.********99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd016504.26E-411209No hitNo description
PROSITE profilePS5087818.6951213IPR000477Reverse transcriptase domain
PfamPF000782.9E-338209IPR000477Reverse transcriptase domain
SuperFamilySSF566721.89E-1711189No hitNo description
Gene3DG3DSA:3.30.70.2705.3E-53854No hitNo description
Gene3DG3DSA:3.30.70.2705.3E-5103182No hitNo description
Gene3DG3DSA:1.10.10.602.4E-7323350IPR009057Homeodomain-like
SuperFamilySSF466892.41E-17323396IPR009057Homeodomain-like
PROSITE profilePS5129418.38338392IPR017930Myb domain
SMARTSM007171.5E-8342390IPR001005SANT/Myb domain
PfamPF002492.4E-9345386IPR001005SANT/Myb domain
CDDcd001671.15E-5345388No hitNo description
Gene3DG3DSA:1.10.10.602.5E-15351389IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MRVRGVVSIS KNQFGFMPGR STTEAIHLVR RLVEKYRDRK KDLHMVFIDL EKAYDKVLRD  60
VLWRCLEMRG VPLVYIRAIN DMYGGAKTRV RTVGGDSDYF PVEMGLHQGS VLSPFLFALA  120
MDELTRSIQK EVPWCMLFAD DIVLIDEPPT KVNDRLEAWR HALKSKGFKL SRSKTEYLEC  180
KFSVERDEAD CDVRLGTQPI PTRENFKYLR SIIQNSCDID DDVTHRIGAA WTKWRLASGV  240
LCDKKIPPKL KDKFYRLVVR PALLYGAECW PIRNAHVQKL HVAEMRMLRW MCGHSRIGAS  300
ILRMSFEMRV PRKQPLYLGS GYGRCGRSQK QRWNNRLKPD IKQDSFTHQE EELILKLHAT  360
IGSRWSIIAQ QLTGRTDNDV KALWNTKLKK KLSAMGIDPV THKPFSQILT DYGNIGGFPK  420
ARTRFVSLNR ELKGAFMSRP EQLQHSLQNF QNFNSLCVKL PKTEASEECF FSNNQDSSNI  480
NQPPVDLFSE LQAIKFVTEA SNYNSPKANF SHHPNPITDC STSSPLSSSS SSSASHSLAE  540
NQVNWCDYLL DDAFLPSNFK DQEDTLTIEE KLVCSGAQDG SNNAPSVKDF ETSLSTKGTS  600
SSSFVEAMLE CENEMFLNFP GLSEDHFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1632339239108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.17e-34myb domain protein 103