PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05369.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bHLH

Protein Properties

Length: 291aa MW: 31040.4 Da PI: 5.2312

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05369.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	173	220	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Sme2.5_05369.1_g00003.1 173 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 220 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-16	167	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.53E-9	167	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.8E-16	169	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	169	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-8	173	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-11	175	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVQMDPPIVN EGSFSAANPS SYSLAEIWPF AAAANAGGNG ELGGGGLGLR MSSFTGLLEA 60 AANSINESTL TEQNGRNAGG AADGGGNVGL RKRDMNSEDD LSKFVSTSDA SDLDGSVAKR 120 LKASQSKEEN GASKVEAESS SQTANKGTEQ SSKPEPPKDY IHVRARRGQA TDSHSLAERA 180 RREKISERMK ILQDLVPGCN KVIGKALVLD EIINYIQSLQ RQVEVFLSMK LEAVNSRMNH 240 PIETFPSKDL APSAFDTSGM IFGAQAPREY AQGAQSEWLH MQVGSSFDRA T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	5e-88	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563548.1	1e-179	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	2e-80	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A1U8G4D0	1e-177	A0A1U8G4D0_CAPAN; transcription factor bHLH79
TrEMBL	A0A2G3AW72	1e-177	A0A2G3AW72_CAPCH; Transcription factor bHLH79
STRING	PGSC0003DMT400062844	1e-177	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	4e-80	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]