PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05447.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 239aa    MW: 25853.8 Da    PI: 8.7425
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05447.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000426789123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ykC+ C+ksF ++  L  H  +H
  Sme2.5_05447.1_g00004.1 67 YKCSVCSKSFGSHQALGGHKASH 89
                             9************9999998887 PP
2zf-C2H213.50.00022155177123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k+F++   L  H r+H
  Sme2.5_05447.1_g00004.1 155 HECSICHKTFPSGQALGGHKRRH 177
                              78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.45E-66493No hitNo description
SMARTSM003550.0146789IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-116792IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.516794IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
PfamPF139126.0E-6117133IPR007087Zinc finger, C2H2
SuperFamilySSF576673.04E-6152182No hitNo description
PfamPF139121.9E-13154179IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889155182IPR007087Zinc finger, C2H2
SMARTSM003550.03155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTLQALNTTT QNHLESWTKC KMRSKRPRSI ITEEQQHPMI SEEEYLAFCL LMLARSTNND  60
FSSKNSYKCS VCSKSFGSHQ ALGGHKASHR KQFPNGDKVS YENSVSATSA NGVSGRTHEC  120
SICLKTFPSG QVLDKVSYEN SVSATSANGV SGRTHECSIC HKTFPSGQAL GGHKRRHYEG  180
KVTSSSSSSG GVGSANIFDL NIPALPEYWP GFGSGEDEVE SPHPAKKSRG FPSTGLVLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2341122e-74AC234112.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 12 clone LE_HBa-95O18, complete sequence.
GenBankHG9755242e-74HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342662.14e-87PREDICTED: zinc finger protein ZAT10-like
TrEMBLM1ATU29e-86M1ATU2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000301681e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-37salt tolerance zinc finger