PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05447.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 168aa    MW: 18879.1 Da    PI: 10.0323
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05447.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013126148123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k+F++   L  H r+H
  Sme2.5_05447.1_g00006.1 126 HECSICHKTFPSGQALGGHKRRH 148
                              78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.05E-77194No hitNo description
Gene3DG3DSA:3.30.160.603.2E-57197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.2E-87297IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.37299IPR007087Zinc finger, C2H2
SMARTSM003550.0747294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-7121148No hitNo description
PfamPF139121.1E-13125150IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.699126153IPR007087Zinc finger, C2H2
SMARTSM003550.03126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MALEALNYST TPNHLESWTK CKMRSKRPRS IVTEEQQRPT ISKEEYLAFC LLMLARSTNN  60
NNNNDFSSKN SYKCSVCGKS FGCHQALGGH KASHSKQFPN GDKVSYEHSV TTTSATSSNG  120
VSGRTHECSI CHKTFPSGQA LGGHKRRHYE RKEHHRHRAV WGLPTTLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754519e-39HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245680.15e-61PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1J6IE761e-59A0A1J6IE76_NICAT; Zinc finger protein zat10
STRINGPGSC0003DMT4000301682e-58(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.14e-34C2H2 family protein