PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05471.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32958.4 Da    PI: 4.9232
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05471.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1954106456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++++  +q+++Le+ Fe +++++ +++ ++A++lgL+ rq+ +WFqNrRa++k
  Sme2.5_05471.1_g00001.1  54 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQIAIWFQNRRARWK 106
                              4567889*********************************************9 PP
2HD-ZIP_I/II122.81.7e-3953143292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kkrrl  +qv++LE+ Fe ++kL+p+rKv++a+eLglqprq+a+WFqnrRAR+ktkqlE+dy+ Lk +y+al+++ +++e+e+e L
  Sme2.5_05471.1_g00001.1  53 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQIAIWFQNRRARWKTKQLERDYNILKVNYEALQHNYTKVEQEKEGL 138
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                               +elk
  Sme2.5_05471.1_g00001.1 139 ITELK 143
                              99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-1947110IPR009057Homeodomain-like
PROSITE profilePS5007116.32548108IPR001356Homeobox domain
SMARTSM003895.0E-1951112IPR001356Homeobox domain
CDDcd000864.42E-1753109No hitNo description
PfamPF000462.1E-1654106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-2059106IPR009057Homeodomain-like
PRINTSPR000312.1E-57988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000312.1E-588104IPR000047Helix-turn-helix motif
PfamPF021832.2E-14108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKRFSFSDSS GKLLYPTEEK NTENLGYSHD FQAMLDGLED EDGIEESGCG TGKKRRLRVD  60
QVQALEKIFE VDNKLDPDRK VKIAQELGLQ PRQIAIWFQN RRARWKTKQL ERDYNILKVN  120
YEALQHNYTK VEQEKEGLIT ELKGLKEKLG EETLLSPTFE RSQEILNKLK NSSDFVESKD  180
GSSDSDSSGV MNEENYNIST LNYQQLMPKV SSYNNGLDHL SLSSSTYTQL IAPSNSTSPS  240
MRAYNNNQQQ GVGRMEEHNG FTTEDSCNIY SVDQAPNLYW YFSDHKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100108RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankY173060.0Y17306.1 Lycopersicon esculentum mRNA for homeodomain protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158857.11e-180PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLM1D1G71e-179M1D1G7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000792301e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129391620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-42homeobox protein 16