PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05597.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 93aa    MW: 10615.1 Da    PI: 6.239
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05597.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.5e-1115713896
                             EEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3 38 ledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                             + +   ++W++ +  ++ + ++ + + W++Fv++n+Lk+gD ++F+l++ s  e ++kv
  Sme2.5_05597.1_g00003.1 15 VHTYGQKKWNMFY--NGAQAGHKFCNEWRKFVNDNNLKVGDGLIFELSKCSASEIHFKV 71
                             4555669******..999999*************************9854555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.926177IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-12875IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-101775IPR015300DNA-binding pseudobarrel domain
PfamPF023624.7E-81769IPR003340B3 DNA binding domain
CDDcd100171.29E-92175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MKMTILLPST RTPIVHTYGQ KKWNMFYNGA QAGHKFCNEW RKFVNDNNLK VGDGLIFELS  60
KCSASEIHFK VQILNGEIPA ELILEDEGDN SEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543423.13e-36PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A1U8E8826e-35A0A1U8E882_CAPAN; B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2G2XRB76e-35A0A2G2XRB7_CAPBA; Uncharacterized protein
TrEMBLA0A2G3DIS06e-35A0A2G3DIS0_CAPCH; Uncharacterized protein
STRINGSolyc01g081400.2.11e-33(Solanum lycopersicum)
STRINGPGSC0003DMT4000045231e-33(Solanum tuberosum)
STRINGPGSC0003DMT4000540932e-33(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-11B3 family protein