PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05600.1_g00008.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 145aa    MW: 16700.8 Da    PI: 8.8153
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05600.1_g00008.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-075397145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                             r rW+++E+  l+ +  +  +g+W++Ia+ +  +Rt+ q  s+ +
  Sme2.5_05600.1_g00008.1 53 RRRWSEDEQRALLIGLDKIDKGNWTAIAKQFVPTRTPTQAASHVR 97
                             78*****************************99****99888866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.14648104IPR017930Myb domain
SuperFamilySSF466897.33E-1051101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-105295IPR009057Homeodomain-like
SMARTSM007173.5E-452102IPR001005SANT/Myb domain
PfamPF002495.9E-65395IPR001005SANT/Myb domain
CDDcd001671.40E-555101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MAKEIYCDAR TGQYNSRTKK GHIKLFGIEI SVNNFCSSEE ESISSSCSTS SKRRRWSEDE  60
QRALLIGLDK IDKGNWTAIA KQFVPTRTPT QAASHVRHWN QSQMEKPMFF LFKKEEIFDT  120
TEKTIYGDVT SNGVMTNGYF FNSLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168974.13e-27PREDICTED: transcription factor MYB1R1-like
TrEMBLM1BLL96e-26M1BLL9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000479121e-26(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-11MYB_related family protein