PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05647.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 426aa    MW: 46475.8 Da    PI: 8.2141
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05647.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-081143643
                             HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
          Myb_DNA-binding  6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                             +eEdell ++v+++G ++W++I + ++      ++k++
  Sme2.5_05647.1_g00005.1 11 PEEDELLQKLVEEHGARNWSLINKLIP-----ADLKNH 43
                             8*************************9.....777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.24E-51044No hitNo description
PfamPF002497.0E-61137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-61137IPR009057Homeodomain-like
Gene3DG3DSA:3.30.420.105.0E-11271347IPR012337Ribonuclease H-like domain
SuperFamilySSF530982.43E-15272348IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGQIIRCRQN PEEDELLQKL VEEHGARNWS LINKLIPADL KNHAGFGGVI ILILKWSIDL  60
LLLMKMILLS KPMPNLRPVM LEDLTFENPH PLLKRSFSIG AVSPNIANPS ASLSPYEYDL  120
SNLGFSRFPQ LCVYLPIAPL GGVLPISASS SVMLDPSASL SLTLTGLRLS KNSIWVNRIK  180
GGVVGFVMCV VVFHHVEYDI RAVLALFYIL GKEERKANVV ADALSRKSMN SIADVPPEKQ  240
GIARDIQQLA NLGVRVAESG DVGISMRGLP RTTRRDDSIW VIVDRLTKSA HFLPVRTTYS  300
AEDYARLCIR EIVCLHGVPV SIISDRGAQF TSNFWRSFQA GLGTQKQYFG SETCGNSDTK  360
NRSCEALGKV GDDGNTGSPP PLCFAGLVTT VPPVHHLQVL FCTDPCSAGA VFHAAGSDAQ  420
CSRSPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-07myb domain protein 73