PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05661.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

BBR-BPC

Protein Properties

Length: 258aa MW: 28636.9 Da PI: 6.777

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05661.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	280.6	7.5e-86	1	258	29	301
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksids 110 m+++aerda+irern+al e+k a+aerdma lqrd+alaern+ + erd++++al l++ s++ +++g ++ sg+k+i + Sme2.5_05661.1_g00006.1 1 MAIMAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERDDAIAALRLQDSSTNdnntVPDSPGNGTESGAKHIYN 86 899***************************************************9998888774422223344555555555554 PP GAGA_bind 111 lqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl 196 qq ++ +++ a + + + p+ +++++ ++ k pk++ ++ ++ + ++ +++ke+ + + +++k+ +l Sme2.5_05661.1_g00006.1 87 QQQ-MHRTTAEAAHG------SMEDPTAGYLNDTDT-------SEVKIPKRRSCSNSNR--DLQEMDSDKEG--DAQLTSWKD-NL 153 444.33333333333......222332222222221.......2233344444333333..22222333333..445667775.8 PP GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282 +ln++++Des++ vPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+Gydls p Sme2.5_05661.1_g00006.1 154 GLNQINFDESAMSVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDLSIP 239 ************************************************************************************ PP GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301 +DLkdhWAkHGtn++ t++ Sme2.5_05661.1_g00006.1 240 LDLKDHWAKHGTNRYSTLK 258 *************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.4E-90	1	258	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	9.1E-80	1	258	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAIMAERDAA IRERNMALEE RKRAFAERDM AMLQRDAALA ERNALIQERD DAIAALRLQD 60 SSTNDNNTVP DSPGNGTESG AKHIYNQQQM HRTTAEAAHG SMEDPTAGYL NDTDTSEVKI 120 PKRRSCSNSN RDLQEMDSDK EGDAQLTSWK DNLGLNQINF DESAMSVPVC SCTGTPQPCY 180 KWGHGGWQSA CCTTTISMYP LPQISNKRYS RVGGRKMSGG AFSKLLNRLA AQGYDLSIPL 240 DLKDHWAKHG TNRYSTLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ982313	0.0	FJ982313.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016560524.1	1e-176	PREDICTED: barley B recombinant-like protein D
Swissprot	Q5VSA8	3e-80	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A1U8FXT2	1e-174	A0A1U8FXT2_CAPAN; barley B recombinant-like protein D
TrEMBL	A0A2G2YPY1	1e-174	A0A2G2YPY1_CAPAN; Uncharacterized protein (Fragment)
STRING	PGSC0003DMT400009137	1e-170	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	2e-76	basic pentacysteine 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]