PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05796.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 273aa MW: 30443.7 Da PI: 9.7512

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05796.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.7e-11	38	78	4	41
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 k rr+++NReAAr+sRqRKka++++Le+ + ++Le+e Sme2.5_05796.1_g00006.1 38 AKTLRRLAQNREAARKSRQRKKAYVQQLETsriRLAQLEQE 78 6889************************9633356666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-9	31	84	No hit	No description
SMART	SM00338	4.9E-8	35	111	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.105	37	81	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-8	38	78	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.7E-7	39	75	No hit	No description
PROSITE pattern	PS00036	0	42	57	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-30	119	194	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MKSESPRTGR VSHTETPSNS NYDKKKGGGS TSDKVTDAKT LRRLAQNREA ARKSRQRKKA 60 YVQQLETSRI RLAQLEQEIQ RARSQGLFIG GGAAGPNISS DAAMFDMEYS RWLNDDQRQI 120 SELRTALQAH IGDGELRVIV DAYIAHYDHI FLLKGIAAKS DVFHLLTGIW ASPAERCFLW 180 LGGFRPSELI KMLITQLDPL TQQQVVGIYS LQQSSQQAEE VLSQGLEQLK QSLIETIATG 240 SVNDGMHHMA VALGKLANLE GLVRQVRILE FKL

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015057833.1	1e-161	transcription factor TGA9-like
Swissprot	Q93XM6	1e-126	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S4BA75	1e-155	A0A1S4BA75_TOBAC; transcription factor TGA2-like isoform X2
TrEMBL	A0A1S4BAH0	1e-156	A0A1S4BAH0_TOBAC; transcription factor TGA2-like isoform X4
TrEMBL	A0A1U7W5W5	1e-155	A0A1U7W5W5_NICSY; transcription factor TGA2-like isoform X2
STRING	Solyc11g068370.1.1	1e-158	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-128	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]