PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05798.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 124aa    MW: 13087.2 Da    PI: 8.9423
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05798.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26055.61.6e-173480146
                   DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkll 46
                             +C aCk+lrrkC+++C++apyf ++q +++fa+vhk+FGasn +  l
  Sme2.5_05798.1_g00001.1 34 PCGACKFLRRKCVNGCIFAPYFGSDQgAARFAAVHKVFGASNTHLCL 80
                             7***********************9989**************87665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.32833124IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-163481IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDEPPSDGDR RKGPGKHVAG AVEPQGPLPA STAPCGACKF LRRKCVNGCI FAPYFGSDQG  60
AARFAAVHKV FGASNTHLCL YTCSMAPTKA PLALQPCTKC SEPAMCLSSC CTSRLTGAKR  120
RWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-142976652LOB family transfactor Ramosa2.1
5ly0_B6e-142976652LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-55HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231253.17e-41LOB domain-containing protein 20
TrEMBLA0A3Q7EMT81e-39A0A3Q7EMT8_SOLLC; Uncharacterized protein
STRINGSolyc01g098220.1.13e-40(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-25LOB domain-containing protein 20