PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05841.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 688aa    MW: 79801.2 Da    PI: 6.6449
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05841.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.79.3e-18357443193
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffk++  s  ++ +r+ +p +f+ ++++  e +++++l+d+ g+ W + +  +k  ++++++ GW++Fv++n ++ gDf++F +d+
  Sme2.5_05841.1_g00003.1 357 FFKIF--SPETSAKRMKIPMSFI-DYKNG-ELPRKVILRDRFGNMWPIGV--TKIERHFYFQYGWEKFVEDNTVEFGDFFIFDYDE 436
                              89999..777777889*******.67433.48899***************..********************************98 PP

                              SSEE..E CS
                       B3  87 rsefelv 93 
                              ++ f ++
  Sme2.5_05841.1_g00003.1 437 NEIFDFK 443
                              8877444 PP
2B3375.9e-125926691089
                              HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
                       B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                              ++++++l++p + +++++++   +  +t++d+ gr+++ +l+ +k  gr++l +GW++ ++ n ++ +D+++ ++++  ++
  Sme2.5_05841.1_g00003.1 592 SNRRDQLYIPTDVVRDNNLVL--PSSMTIRDSAGREFDSRLKNWKD-GRIWLVGGWRSLCRWNLVEKNDSCICEFVRGkRN 669
                              578899***********9995..5569999***********76666.5899*********************998754333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.2E-2169244IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003642.2E-695110No hitNo description
PfamPF009312.7E-8111244IPR002182NB-ARC
PRINTSPR003642.2E-6153167No hitNo description
Gene3DG3DSA:2.40.330.102.0E-18353447IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.676355448IPR003340B3 DNA binding domain
SMARTSM010192.7E-13357448IPR003340B3 DNA binding domain
PfamPF023626.4E-16357441IPR003340B3 DNA binding domain
CDDcd100172.53E-12357438No hitNo description
SuperFamilySSF1019368.44E-19357450IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-15579673IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-16579667IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.08583682IPR003340B3 DNA binding domain
CDDcd100176.75E-7584667No hitNo description
SMARTSM010193.1E-5586678IPR003340B3 DNA binding domain
PfamPF023621.9E-10592670IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MASSSSFADP SHVRYQGESL KKHLPNTNLG IRMMLRGYRR CRESRIESEC IQELVDNVSF  60
KLCKTSSYLQ DIVGIDTHLG KIESQLEMEI IDVRILGIWG MGGVGACFLA DVKETNTNEM  120
HSLQNIFLSQ LLREDNKKYV NNKEDGKRLM AHRLRFIKVL VVLDDINHHD HWEYLAGDLR  180
WFGSGCRIIA TRNKQIIGKN NAVYEVTTLF EHDAIQLFNH CAFKDEAPDG HIMKLASEVV  240
SHAKAIAVST EAKSKWLRKP EENTRFYGDA KFGIFGSRQI ISGSRLLLSF REISRNRRKN  300
EAGVKDEDVI LWDKGTTIIY HSSSSSSYRA KFAFYELTYL FQAAFFYKKK RTMEKGFFKI  360
FSPETSAKRM KIPMSFIDYK NGELPRKVIL RDRFGNMWPI GVTKIERHFY FQYGWEKFVE  420
DNTVEFGDFF IFDYDENEIF DFKLLGRTRC EKKGVGDLKL DVKEEETEEM SVEHQKSVEA  480
NGKNWASDSN DSSFSDDNDE EYMVEEEEDE DEEYEETSNK VPHHVEDDDE DEEEIEEEGE  540
NQRANRFKGK APCSKASVCK VRKRHDPFGV DIFKSGLATQ PKNPYFIAKI RSNRRDQLYI  600
PTDVVRDNNL VLPSSMTIRD SAGREFDSRL KNWKDGRIWL VGGWRSLCRW NLVEKNDSCI  660
CEFVRGKRNK GLYLQVKVLH EGASSAMC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-141HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45050.14e-15Disease resistance protein (TIR-NBS-LRR class)