PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05868.1_g00004.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 469aa MW: 51256.8 Da PI: 5.3735

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05868.1_g00004.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.9e-15	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g +t+ q++s+ qk+ Sme2.5_05868.1_g00004.1 55 REKWTEEEHQKFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 99 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-16	49	103	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.057	50	104	IPR017930	Myb domain
TIGRFAMs	TIGR01557	5.6E-17	53	102	IPR006447	Myb domain, plants
SMART	SM00717	1.5E-12	54	102	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-12	55	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-9	55	95	IPR009057	Homeodomain-like
CDD	cd00167	1.51E-9	57	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MVAVGVNQVE GACQGASSMI SSKFETVATQ GKVPTCLANE NVLKVRKPYT ITKQREKWTE 60 EEHQKFLEAL KLYGRAWRQI EEYVGSKTAI QIRSHAQKFF AKVARDSGND GDESLNAIDI 120 PPPRPKKKPL HPYPRKMADS FAANKTVSGQ PERSPSPNGS GRDNRSPDSV LSADDVGVSE 180 YPIAEQQNSR FSPVSCTTDA HTATAISAEN DVESMNSNSN TLEEIHVALK PVAASTNPIT 240 NSHMECDVVH TENSFNGEKV VEPPSASIKL FGQTVFVPDA NNLDLQAPDN CNSLPSKVTE 300 KEIKISNEDA FHEFQANQAH SPFMLAMVPG NAIPPASWLS QYTLENNAES TAAFPTTISW 360 WSWYQDLVYR SISSCGQTAV ETAAHCQVPK DEEPQREGSS TGSSIGSASE VDDGNKSSET 420 IESKCTTKSD KWNSSKGFVP YKRCLTERDG KSSGAVLEER ESQRVRVCS

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MVAVGVNQVE GACQGASSMI SSKFETVATQ GKVPTCLANE NVLKVRKPYT ITKQREKWTE  60
EEHQKFLEAL KLYGRAWRQI EEYVGSKTAI QIRSHAQKFF AKVARDSGND GDESLNAIDI  120
PPPRPKKKPL HPYPRKMADS FAANKTVSGQ PERSPSPNGS GRDNRSPDSV LSADDVGVSE  180
YPIAEQQNSR FSPVSCTTDA HTATAISAEN DVESMNSNSN TLEEIHVALK PVAASTNPIT  240
NSHMECDVVH TENSFNGEKV VEPPSASIKL FGQTVFVPDA NNLDLQAPDN CNSLPSKVTE  300
KEIKISNEDA FHEFQANQAH SPFMLAMVPG NAIPPASWLS QYTLENNAES TAAFPTTISW  360
WSWYQDLVYR SISSCGQTAV ETAAHCQVPK DEEPQREGSS TGSSIGSASE VDDGNKSSET  420
IESKCTTKSD KWNSSKGFVP YKRCLTERDG KSSGAVLEER ESQRVRVCS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151804	1e-169	AC151804.1 Solanum demissum chromosome 5 clone PGEC475B22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563967.1	0.0	PREDICTED: protein REVEILLE 1-like isoform X2
TrEMBL	A0A1U8FXR3	0.0	A0A1U8FXR3_CAPAN; protein REVEILLE 1-like isoform X2
STRING	PGSC0003DMT400065850	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7447	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-38	MYB_related family protein