PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05897.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 142aa    MW: 16158.4 Da    PI: 8.6713
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05897.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA591.5e-1894137347
                CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhA 47 
                              p+YVN KQy++IlkRRq Rak ++++kl  k+rkpylheSR +  
  Sme2.5_05897.1_g00002.1  94 PIYVNVKQYSAILKRRQVRAKRQAQNKL-VKNRKPYLHESRVQYS 137
                              9***************************.************8865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.0E-1390142IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115223.05491142IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.3E-1594137IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-1294116IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.0E-12125142IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MIEVSTPQLV EGHDHPLSEV IEVSNPQLVD DLPPLSEPQV HHDHPTACLS YPWADTDFGR  60
LVATYGSNAI IYPQMVGVTS TRVALPLECT ESLPIYVNVK QYSAILKRRQ VRAKRQAQNK  120
LVKNRKPYLH ESRVQYSDKS RR
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8654091e-154KJ865409.1 Capsicum annuum cultivar CMS line FS4401 mitochondrion, complete genome.
GenBankKJ8654101e-154KJ865410.1 Capsicum annuum cultivar Jeju mitochondrion, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqYP_009049690.13e-65hypothetical protein (mitochondrion)
SwissprotQ93ZH25e-23NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A075VW316e-64A0A075VW31_CAPAN; Uncharacterized protein
TrEMBLA0A3G0TEG06e-64A0A3G0TEG0_CAPAN; Uncharacterized protein
STRINGXP_009608945.12e-59(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-18nuclear factor Y, subunit A3