PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05942.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 146aa    MW: 16778.8 Da    PI: 8.47
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05942.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-103475546
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
                             ++ +r+++NRe+Ar sR RK++ ++ L      L +eN +  
  Sme2.5_05942.1_g00005.1 34 RKRKRMISNRESARGSRMRKQKHLDDLMSQLSHLRNENNQIL 75
                             6789**********************************8754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-153094IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7953295IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.3E-1032109No hitNo description
SuperFamilySSF579596.19E-123486No hitNo description
PfamPF001702.3E-83475IPR004827Basic-leucine zipper domain
CDDcd147023.16E-133585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MASSIGTSSG SGSGSYTLQN SRSEEDLQRV MDERKRKRMI SNRESARGSR MRKQKHLDDL  60
MSQLSHLRNE NNQILRSMSV TTQNYLNIEA ENSILRARLS ELRHTLQSLT QIISVLNYNT  120
LIESFTADES CNYMDHPIMT ADIMQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13354RKRKRMISNRESARGSRMRKQK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225641.13e-56PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L57e-35BZP44_ARATH; bZIP transcription factor 44
TrEMBLM1BEU02e-58M1BEU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000435423e-59(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.17e-37basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]