PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_05959.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family YABBY
Protein Properties Length: 161aa    MW: 18081.4 Da    PI: 8.4881
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_05959.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY63.77.4e-20246246
                    YABBY  2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
                             + ++sse++Cyv+CnfCnt+lav++P++ ++ +vtv+CGhC++l 
  Sme2.5_05959.1_g00001.1  2 EFVQSSEHLCYVHCNFCNTVLAVEIPYKRIMDTVTVKCGHCSNLS 46
                             67899*************************************984 PP
2YABBY1021.3e-315614573163
                    YABBY  73 eelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaak 158
                               +  +++++++ + ++ +++ +  ss   s++++  +p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaak
  Sme2.5_05959.1_g00001.1  56 GQCFDHQSTFQGYCSEFKNKGQASSS-ASSTSSEPLSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAENPEIPHREAFSAAAK 140
                              55555666666666665555555555.4488899999************************************************* PP

                    YABBY 159 nWahf 163
                              nWa +
  Sme2.5_05959.1_g00001.1 141 NWARY 145
                              ***76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-546145IPR006780YABBY protein
SuperFamilySSF470951.83E-989143IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.2E-699144IPR009071High mobility group box domain
CDDcd013902.23E-6106142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEFVQSSEHL CYVHCNFCNT VLAVEIPYKR IMDTVTVKCG HCSNLSFLST RPPIQGQCFD  60
HQSTFQGYCS EFKNKGQASS SASSTSSEPL SPKAPFVVKP PEKKHRLPSA YNRFMKEEIQ  120
RIKAENPEIP HREAFSAAAK NWARYIPNPP NGSLTENANN V
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677480.0KJ667748.1 Solanum melongena CRC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075853.11e-101protein CRABS CLAW
SwissprotQ76EJ02e-61YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A068FRS91e-115A0A068FRS9_SOLMM; CRC protein
STRINGPGSC0003DMT4000728931e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-60YABBY family protein