PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_05989.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 117aa MW: 13327.9 Da PI: 4.5619

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_05989.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.7e-11	43	80	26	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ae+eeL+ kv++L++eN+ Lk+el +l++e++kl+se+ Sme2.5_05989.1_g00002.1 43 AECEELQLKVETLSNENHGLKEELRKLSEECEKLTSEN 80 89**********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06005	3.4E-7	39	90	IPR009252	Cell division protein ZapB
Pfam	PF00170	1.1E-7	43	80	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF58050	4.45E-5	43	90	IPR032038	Adenomatous polyposis coli, N-terminal dimerisation domain
Gene3D	G3DSA:1.20.5.170	1.9E-6	43	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000917	Biological Process	barrier septum assembly
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043093	Biological Process	FtsZ-dependent cytokinesis
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MNRLILHGEG FNWNGKMGVE WCRRVKFSCD VNEEEVQKDS ALAECEELQL KVETLSNENH 60 GLKEELRKLS EECEKLTSEN NSIKDELTRL CGPEAVSKLE SNANAMRLQS NVEEAKS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013873	1e-106	BT013873.1 Lycopersicon esculentum clone 132853R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001316475.1	4e-40	G-box-binding protein
Refseq	NP_001316476.1	4e-40	G-box-binding protein
Refseq	XP_006346934.1	4e-40	PREDICTED: G-box-binding factor 1-like isoform X1
Refseq	XP_006346935.1	4e-40	PREDICTED: G-box-binding factor 1-like isoform X2
Refseq	XP_010317200.1	4e-40	G-box-binding protein isoform X1
Refseq	XP_015066326.1	4e-40	G-box-binding factor 1-like isoform X1
Refseq	XP_015066327.1	4e-40	G-box-binding factor 1-like isoform X1
Refseq	XP_019067521.1	4e-40	G-box-binding protein isoform X1
Swissprot	P42774	5e-19	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A3Q7EYS3	1e-38	A0A3Q7EYS3_SOLLC; Uncharacterized protein
STRING	Solyc02g062950.2.1	2e-39	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3780	24	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	2e-21	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]