PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06000.1_g00004.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 146aa    MW: 16523.8 Da    PI: 6.1409
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06000.1_g00004.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.6e-18957149
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             krie+k +r++tf+kRr+g++KK +EL   Cda++avi fs  g+++ +
  Sme2.5_06000.1_g00004.1  9 KRIEDKAKRHTTFTKRRQGLFKKTKELVKRCDAQAAVITFSLAGNVFAF 57
                             79******************************************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-22160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.932161IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-16323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-22385IPR002100Transcription factor, MADS-box
PfamPF003193.7E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MVRTKVEIKR IEDKAKRHTT FTKRRQGLFK KTKELVKRCD AQAAVITFSL AGNVFAFGHP  60
SVDVVVNRYI AATSAPEHDE VPVHEEAEKE EEDAVIETAG DEETLSFKQS LKDMGMDELE  120
ELNRTMEEMK KKVVDKINGI ISSSKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339624.14e-77PREDICTED: MADS-box transcription factor 47-like
TrEMBLM0ZG998e-76M0ZG99_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000002101e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-20AGAMOUS-like 62