PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06014.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CO-like
Protein Properties Length: 426aa    MW: 48230 Da    PI: 6.7359
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06014.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.7e-0764106339
                 zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                               r C+ ++++ + l+C+ ++  lC +C  e H+       Ht+
  Sme2.5_06014.1_g00001.1  64 RRLCDFCGNNTALLYCRADSAKLCFTCDREVHSTnqlftkHTR 106
                              689*****************************66778888875 PP
2zf-B_box21.35.5e-07109150542
                 zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg....Htvvpl 42 
                               C+++++ ++++ C + ++ +C++C  e+H      H+++pl
  Sme2.5_06014.1_g00001.1 109 LCNLCDSSPASILCSTESCVFCQNCDWESHDKqsalHERRPL 150
                              6*****************************557899998875 PP
3CCT62.51.3e-21375417143
                      CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                              Re a++RYkeK+ktR++eK+irYesRKa+Ae+R R+KGrF+k 
  Sme2.5_06014.1_g00001.1 375 RETAVSRYKEKKKTRRYEKHIRYESRKARAETRTRIKGRFAKM 417
                              99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.55262109IPR000315B-box-type zinc finger
SMARTSM003369.0E-1562109IPR000315B-box-type zinc finger
PfamPF006435.3E-664106IPR000315B-box-type zinc finger
CDDcd000214.62E-765106No hitNo description
PROSITE profilePS501199.3105150IPR000315B-box-type zinc finger
CDDcd000210.00934109150No hitNo description
PfamPF062034.2E-16375417IPR010402CCT domain
PROSITE profilePS5101714.862375417IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLNKKAQPFQ SSKRLLPPLP NLYFPYNYII ISNTQKKKLP TIMTELKEDQ ENHHHHQQQQ  60
SERRRLCDFC GNNTALLYCR ADSAKLCFTC DREVHSTNQL FTKHTRWLLC NLCDSSPASI  120
LCSTESCVFC QNCDWESHDK QSALHERRPL EGFNGCPCVS ELLSILGFED LGKKELLYGG  180
GESVCYDGGY GFSDWVIWDT PSVVSIDDVI ANNDSGHNFQ AIGVPPLPKN RNAACGKHKE  240
EILCQLRELS KLEPNSSDDQ DETVPTIGFQ SVEPAQNCPM KFKGSGFMQN ADQHVVPSSE  300
GSALHLCGDT GEFADQGFSS SLVDCFIETK CLLPDRDSDN ASGGANEEQS HNPPTAETFQ  360
MVPKVVHREL NSQERETAVS RYKEKKKTRR YEKHIRYESR KARAETRTRI KGRFAKMDHR  420
DSSIHQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136850.0BT013685.1 Lycopersicon esculentum clone 132507F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359430.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13
TrEMBLM1AT270.0M1AT27_SOLTU; B-box zinc finger protein 9
STRINGPGSC0003DMT4000295910.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.16e-81B-box type zinc finger protein with CCT domain