PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06053.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 197aa    MW: 21966.4 Da    PI: 9.3659
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06053.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-135599347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rW+++E+  ++ + ++lG+g+W++Ia+ +  +Rt+ q+ s+ qky
  Sme2.5_06053.1_g00002.1 55 RWSEDEQRAFLIGLHKLGKGNWTAIAKQFVSTRTPTQVASHAQKY 99
                             9*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.60448104IPR017930Myb domain
SuperFamilySSF466898.61E-1551105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-115299IPR009057Homeodomain-like
SMARTSM007171.7E-1052102IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.1E-1453103IPR006447Myb domain, plants
CDDcd001672.15E-955100No hitNo description
PfamPF002499.9E-125599IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAKEIYSDAR TGQYNSRTKK EAIKLFGVEI SVNNVCPSGE ESTNSSCSRN SKGRRWSEDE  60
QRAFLIGLHK LGKGNWTAIA KQFVSTRTPT QVASHAQKYF ERQKEKTALK RNKSSVFDIN  120
LDKESSNTCT ELVIAVENNN KGKQPLNEES PPNDAYAYVP MTNYQFNFVT SSTNATPVHR  180
VSSQSSSASV DNLDLTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168973.11e-78PREDICTED: transcription factor MYB1R1-like
TrEMBLM1DC733e-77M1DC73_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000866415e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-25MYB_related family protein