PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06152.1_g00001.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Protein Properties

Length: 261aa MW: 29427.6 Da PI: 7.9302

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06152.1_g00001.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.5	4.4e-17	153	253	1	98
EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDf 79 f+k l+ sd+ + +rlv+pkk+ae++ + + ++ +++ d++g++W++ ++++ +s++ yvl+ G +++ +++ ++gD+ Sme2.5_06152.1_g00001.1 153 FQKLLSASDADLTlSRLVIPKKCAEAYfprlS--GPLKIPISILDTEGKEWNFHFRFWPNSRSkmYVLE-GLRDYMVSKKWQAGDV 235 88899888875444*************553..457788*************777777758888.************ PP EEEEE-SSSEE..EEEEE- CS B3 80 vvFkldgrsefelvvkvfr 98 v+F++++ +++lv+++++ Sme2.5_06152.1_g00001.1 236 VTFYRIE-PGQKLVMGLRN 253 **887.66667777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-20	150	252	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.5E-26	150	255	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.40E-21	151	253	No hit	No description
SMART	SM01019	4.6E-18	153	255	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.5E-14	153	253	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.671	154	255	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MASSSSSSSS SITFCFQCED SSNSVDFRNG WRLRSGKFAQ LCHRCASVYE YGRFCETFHP 60 SDDGWRDCES CGKLIHCGCI VSFNTYLLLD FGGIMCMECS KKNFILARNR CLSHETPVPT 120 GESQLDATQT MIEPQYMPHV TESNCGRVVT PLFQKLLSAS DADLTLSRLV IPKKCAEAYF 180 PRLSGPLKIP ISILDTEGKE WNFHFRFWPN SRSKMYVLEG LRDYMVSKKW QAGDVVTFYR 240 IEPGQKLVMG LRNTSAGSTT S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fas_A	3e-36	149	257	5	112	B3 domain-containing transcription repressor VAL1
6fas_B	3e-36	149	257	5	112	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC193781	1e-69	AC193781.1 Solanum lycopersicum chromosome 10 clone C10SLe0045H11, complete sequence.
GenBank	HG975449	1e-69	HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBank	HG975522	1e-69	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015089104.1	1e-176	B3 domain-containing protein Os07g0679700-like isoform X1
Swissprot	Q6Z3U3	8e-37	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A1U8EEK5	1e-167	A0A1U8EEK5_CAPAN; B3 domain-containing protein Os07g0563300-like
STRING	Migut.H01903.1.p	1e-102	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12994	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21550.1	2e-31	VP1/ABI3-like 3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]