PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06171.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family FAR1
Protein Properties Length: 211aa    MW: 24353 Da    PI: 4.7313
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06171.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.83.5e-08106184190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              +fY+e+   + F +++++++ks+  +    + f C k+ k+++++++          +r++C+a+++   ++dg   vtk+++eHn
  Sme2.5_06171.1_g00005.1 106 SFYKEHNCLIDFGIVMKSTNKSS-YEYARYACFACDKSRKSTPRTTS----------KRVDCRARVNCLVKSDGSCWVTKVVTEHN 180
                              59****************99994.44467777888888877776555..........9**************************** PP

                     FAR1  87 Hela 90 
                               +l 
  Sme2.5_06171.1_g00005.1 181 YQLE 184
                              *997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MPSYKMPKEH DEALDGGYGN GDGPDAFLDS SNENLPILRC EELNRFNQVE QESYQSVSDR  60
KESDFEDIWF EEDEEYPKID DNFSKQQYIE GHIEGMNLGS VEALFSFYKE HNCLIDFGIV  120
MKSTNKSSYE YARYACFACD KSRKSTPRTT SKRVDCRARV NCLVKSDGSC WVTKVVTEHN  180
YQLEPHLSLF FSCPRTISQT LKRSLESHDI A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-06FAR1 family protein