PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06188.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 169aa    MW: 18555.2 Da    PI: 7.1402
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06188.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.74e-386105199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              +C aC++lrrkC+k+C++apyf ++q +++fa+vhk+FGasn +kll ++p+++r +++ +l+yeA+ar+rdPvyG+v+ il+lqq
  Sme2.5_06188.1_g00003.1   6 PCGACRFLRRKCEKGCIFAPYFDSQQgMAHFAAVHKVFGASNASKLLLTIPPHKRLETVVTLCYEARARVRDPVYGCVADILDLQQ 91 
                              7*********************999988********************************************************** PP

                   DUF260  86 qleqlkaelallke 99 
                              q  +l+aela++++
  Sme2.5_06188.1_g00003.1  92 QAVTLQAELAYVQA 105
                              **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4325107IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-376104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSSGGPCGAC RFLRRKCEKG CIFAPYFDSQ QGMAHFAAVH KVFGASNASK LLLTIPPHKR  60
LETVVTLCYE ARARVRDPVY GCVADILDLQ QQAVTLQAEL AYVQACISTL QQQQQQYHHH  120
HHPMPPPTPS QADVAAACCS NISSSVCIDP SVDIRELCNV LDQQLDNSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3521007104LOB family transfactor Ramosa2.1
5ly0_B3e-3521007104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-61HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339769.13e-95PREDICTED: LOB domain-containing protein 19
SwissprotO813223e-52LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1U8FGA22e-85A0A1U8FGA2_CAPAN; LOB domain-containing protein 31
TrEMBLA0A2G2XNX82e-85A0A2G2XNX8_CAPBA; LOB domain-containing protein 31
TrEMBLA0A2G3AHC82e-85A0A2G3AHC8_CAPAN; LOB domain-containing protein 19
TrEMBLA0A2G3DDY22e-85A0A2G3DDY2_CAPCH; LOB domain-containing protein 31
STRINGSolyc01g091400.2.11e-80(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.13e-53LOB domain-containing protein 31