PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06280.1_g00002.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

MYB_related

Protein Properties

Length: 475aa MW: 52481.6 Da PI: 6.2139

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06280.1_g00002.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	57	101	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Sme2.5_06280.1_g00002.1 57 RERWSEEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 101 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.08E-16	51	105	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.204	52	106	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.9E-15	55	104	IPR006447	Myb domain, plants
SMART	SM00717	5.5E-13	56	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.2E-9	57	97	IPR009057	Homeodomain-like
Pfam	PF00249	6.8E-14	57	100	IPR001005	SANT/Myb domain
CDD	cd00167	3.13E-10	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0010600	Biological Process	regulation of auxin biosynthetic process
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MAIRDQSESD TILPSRNRIS VDVGAPPPRN VLLEEQVTQE EEFAPKIRKP YTISKQRERW 60 SEEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVVRESS NGDASCVKSI 120 EIPPPRPKRK PMHPYPRKMA TPLTNGTLVP EKLKRSASPD LSLSEPENQS PTSVLSTLGS 180 DAFGTVDSTK PIENSSPVSS VVAENSGDLL LSEPSGFILE ERRSSPAQAY ASSNPDNQTC 240 MKLDLFPEEN DFVKEGSDEA SSTQCLKLFG KTVLVTDTHM TSSTSGQISL TDANDDASRT 300 LPRSSFPTKY LPWDLECLQS TFTVGPPTRS YYFPAPNGSS GPNQSVSSPL LSWGSSYASP 360 CTQVHNPIPI KRRLLFSDID LEDKETQKEG SSTSSNTESV DAELSGDKNL EIEAQSSSRN 420 VLEESVRASL PSVLANSMKR VKGFVPYKRC LTERGISSST LTGEEREEQR TRLCL

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MAIRDQSESD TILPSRNRIS VDVGAPPPRN VLLEEQVTQE EEFAPKIRKP YTISKQRERW  60
SEEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVVRESS NGDASCVKSI  120
EIPPPRPKRK PMHPYPRKMA TPLTNGTLVP EKLKRSASPD LSLSEPENQS PTSVLSTLGS  180
DAFGTVDSTK PIENSSPVSS VVAENSGDLL LSEPSGFILE ERRSSPAQAY ASSNPDNQTC  240
MKLDLFPEEN DFVKEGSDEA SSTQCLKLFG KTVLVTDTHM TSSTSGQISL TDANDDASRT  300
LPRSSFPTKY LPWDLECLQS TFTVGPPTRS YYFPAPNGSS GPNQSVSSPL LSWGSSYASP  360
CTQVHNPIPI KRRLLFSDID LEDKETQKEG SSTSSNTESV DAELSGDKNL EIEAQSSSRN  420
VLEESVRASL PSVLANSMKR VKGFVPYKRC LTERGISSST LTGEEREEQR TRLCL

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00515	DAP	Transfer from AT5G17300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350462.1	0.0	PREDICTED: protein REVEILLE 1
Swissprot	F4KGY6	4e-61	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	M1BXP3	0.0	M1BXP3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400055263	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-56	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]