PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06364.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 383aa    MW: 43476.9 Da    PI: 7.8941
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06364.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-5251321128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkat
  Sme2.5_06364.1_g00002.1   5 MLPGFRFHPTDEELVGFYLRRKVQQKQISI-ELIKQLDIYKYDPWDLPKLAALGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKAT 89 
                              579***************************.89***************8777899******************************* PP

                      NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Sme2.5_06364.1_g00002.1  90 GTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 132
                              ********956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-574163IPR003441NAC domain
PROSITE profilePS5100556.9385163IPR003441NAC domain
PfamPF023651.3E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDEVMLPGFR FHPTDEELVG FYLRRKVQQK QISIELIKQL DIYKYDPWDL PKLAALGEKE  60
WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL VFYKGRAAKG  120
IKTDWMMHEF RLPSITDSNA PKRFLDKHIP PNDSWAICRI FKKANSNAHR ALSHSWVSPP  180
QVLPQSNTTS HDFVTSSHFT NTSPIQFNDL QNSSNNMTNS SFTTLDIPLY KTLNSMSSYN  240
NRHPQQISIS NHHDPITSYT TFSSSCVDNM NNIDASSLLL NMSSSIFGDY SIALPTENME  300
GGGGGVQDET LKEANSVINN MEHMEEQWGN HVVRSNIGVL PLMNNFPLNM AADAWKTNLL  360
WDSFSPCPSS EMSTSYSTNK CYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-55716619168NO APICAL MERISTEM PROTEIN
1ut4_B1e-55716619168NO APICAL MERISTEM PROTEIN
1ut7_A1e-55716619168NO APICAL MERISTEM PROTEIN
1ut7_B1e-55716619168NO APICAL MERISTEM PROTEIN
4dul_A1e-55716619168NAC domain-containing protein 19
4dul_B1e-55716619168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492881e-149AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence.
GenBankEF5142121e-149EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574673.10.0PREDICTED: putative NAC domain-containing protein 94
TrEMBLA0A2G2VLP00.0A0A2G2VLP0_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000803070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-104NAC family protein