PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06460.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 227aa    MW: 25900.8 Da    PI: 8.4062
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06460.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.6e-154692354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             r+h+e+E+rRRdriN  +++Lr+l+P++     +K++Ka+ L  +v+++k+L
  Sme2.5_06460.1_g00003.1 46 RSHSEAEKRRRDRINAQLSTLRKLIPTC-----EKMDKATLLASVVNHVKDL 92
                             78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.91E-114295No hitNo description
PROSITE profilePS5088816.5644392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-164695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1446103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-124692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.49E-5134185No hitNo description
Gene3DG3DSA:3.30.70.2608.5E-4134177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENSFCSEYW PETADLNQGS LFLLPQVQNY PYYFPQCSDQ AESASRSHSE AEKRRRDRIN  60
AQLSTLRKLI PTCEKMDKAT LLASVVNHVK DLKAKTTEIS KLLNTPTDID EVIIEEEENK  120
ACTSMNKSVI LKASFCCDDR PELFSELRRV IKNLKLTMME ADITSLGGRI KGIFTLCPND  180
NCANDVCMNS LKRSLKLVLC RIAITPSTSN YRIKSKRQRF FLPPQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213218KSKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564908.11e-125PREDICTED: transcription factor bHLH51
TrEMBLA0A2G3CUE21e-125A0A2G3CUE2_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000712931e-118(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58202235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.18e-34bHLH family protein