PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_06478.1_g00005.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 195aa MW: 21543.2 Da PI: 7.1316

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_06478.1_g00005.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	192.5	1.9e-59	20	172	6	159
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvek 88 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhC++ll l +++ +h+++s+ + llee +++ n+ +n+++ Sme2.5_06478.1_g00005.1 20 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCSNLLPGWLLPSTNHHHQLHHFGHSYFSPshnLLEEISNATPNFLMNQSN 105 689*************************************99999999999999999998877222444444444444444433 PP YABBY 89 eesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 +++ + +++pr pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn Sme2.5_06478.1_g00005.1 106 STHDFVLP-----ARPGFDDLPRSPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 172 33333322.....4556788999999789****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-56	20	172	IPR006780	YABBY protein
SuperFamily	SSF47095	2.75E-6	124	170	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSSSNSSSLD HLAPPPPPPP SEQLCYVHCN VCDTVLAVSV PCTSLFKTVT VRCGHCSNLL 60 PGWLLPSTNH HHQLHHFGHS YFSPSHNLLE EISNATPNFL MNQSNSTHDF VLPARPGFDD 120 LPRSPPVINR PPEKRQRVPS AYNRFIKEEI QRIKAGNPDI SHREAFSAAA KNDGEDVLMK 180 DGLFNTSANV SVSPY

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667759	0.0	KJ667759.1 Solanum melongena YAB1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355492.1	1e-117	PREDICTED: protein YABBY 4
Swissprot	A2X7Q3	4e-58	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	4e-58	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A068FRT5	1e-118	A0A068FRT5_9SOLN; YAB1 protein
STRING	PGSC0003DMT400012083	1e-116	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-56	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]