PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_06554.1_g00002.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24442.2 Da    PI: 7.0177
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_06554.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF497.6e-16959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k+ie+   rq  +skR+  i+KK + L vLCd++va+++fs+t+++  yss
  Sme2.5_06554.1_g00002.1  9 KKIEDPVSRQQFYSKRKDSIIKKTNQLAVLCDIDVALLMFSPTDQVTCYSS 59
                             689*******************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.222161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-21275IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-14323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-161056IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRNKLVMKK IEDPVSRQQF YSKRKDSIIK KTNQLAVLCD IDVALLMFSP TDQVTCYSSK  60
GSVEDTMLHI MNHPRELNRQ TLPDDQHLMQ SLTQSKIEGE MVQKIAMNYK PQVENISSVQ  120
EADACVQFLK SSLEQIQQSK AKFFGGEDFL KANENVVVAS VNTEDTTVAD FSSEIWKTCY  180
VCLDSLAKLS IGDLILRGLH NRETLIPGHL MSLRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402901e-50AC240290.1 Solanum tuberosum chromosome 7 clone RHPOTKEY032K01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580679.16e-71PREDICTED: agamous-like MADS-box protein AGL66 isoform X2
TrEMBLA0A1U8HJH41e-69A0A1U8HJH4_CAPAN; agamous-like MADS-box protein AGL66 isoform X2
STRINGXP_009776411.12e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.22e-22AGAMOUS-like 67